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Put the agplus file as well as the supporting shell scripts any where you like. You will want the underneath program to utilize our supporting shell scripts (bam2bwshifted, agpdraw-line and assignExprGroup) and also to comply with our Tutorial portion Within this README.

Make sure you Notice that the road-smoothing perform is a component of agpdraw-line and so just isn't finished by agplus. We offered agpdraw-line as a visible illustration of agplus output and contemplate it is actually sufficient usually.

If you don't sense like using the git Edition, remember to obtain the release Edition of agplus and duplicate the scripts into ~/bin.

If you desire to to see the distribution by expression amounts, incorporate the subsequent technique immediately after Phase 2.

shell ecosystem and all resources are installed under the consumer's property Listing (~/bin). You should arrange The trail environment as below.

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Develop a tab-delimited assignment file manually as below with any text editor or MS Excel after which you can save it as assign_chromHMM.txt. It is possible to duplicate & paste this example but you ought to be informed which the delimiters ought to be tabs (tabs are sometimes reworked into multiple white spaces when pasting).